PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953349
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 308aa    MW: 33145.5 Da    PI: 6.2241
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953349genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS186.61.7e-5771258178374
       GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                f + va++  ++++e+L v ++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a++++
  462953349  71 FCA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYGE 162
                677.79999*********************9..999999999999....**********************.899************************* PP

       GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ++ er++vE++ll+rei+nv+a  g +r  + + +++Wre+l ++GF++++l  +aa+qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  462953349 163 DNPERHVVEQQLLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 258
                ***************************988887.**************************************************************8 PP
2GRAS31.72e-10261301334374
       GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +++a+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  462953349 261 QTSASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 301
                57899***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.4481238IPR005202Transcription factor GRAS
PfamPF035146.0E-5571258IPR005202Transcription factor GRAS
PfamPF035146.9E-8261301IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGSSSLLLFP SSSSAASSYS AASQSLHATT TSSSSSHSHL LPPLPISQPP QDHQLLLHYL  60
HLVDDPAATM FCAVAEKAGN VDPEKLGVTR REAVAVHWLH HSLYDVTGSD SNTLWLIQRL  120
APKVVTMVEQ DLSHSGSFLA RFVEAIHYYS ALFDSLDASY GEDNPERHVV EQQLLSREIR  180
NVLAVGGPAR SGDVKFGSWR EKLAQSGFRA ASLAGSAAAQ ASLLLGMFPS DGYTLVEENG  240
ALKLGWKDLC LLTASAWRPI QTSASLLLGM FPSDGYTLVE ENGALKLGWK DLCLLTASAW  300
RPIQTSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-10871259192380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953349
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945100.0FP094510.1 Phyllostachys edulis cDNA clone: bphylf057n24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615402.11e-125protein SCARECROW 1
SwissprotQ2RB591e-126SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A0E0BMX41e-130A0A0E0BMX4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0R3K11e-128A0A0E0R3K1_ORYRU; Uncharacterized protein
STRINGOGLUM12G01020.11e-131(Oryza glumipatula)
STRINGORUFI11G01380.11e-128(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-96GRAS family protein