PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953394
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 79aa    MW: 8744.2 Da    PI: 8.8458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953394genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-082954227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C ++  +G+CkyG++C F+H++
  462953394 29 DQPVCTYYDCFGICKYGPSCMFNHPF 54
               6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.53E-62755IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3382755IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-52954IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MKCRYHHQRS RLPAPLTGLS PLGLPIKPDQ PVCTYYDCFG ICKYGPSCMF NHPFNFGPPV  60
PAARSPLHGQ CPTPANFTV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953394
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807655.18e-30zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY29e-26C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0A9CNH12e-36A0A0A9CNH1_ARUDO; Uncharacterized protein
STRINGPavir.Ha00283.1.p3e-31(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-15C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]