PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954008
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 193aa    MW: 20068.7 Da    PI: 9.3481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954008genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029729123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               +kC+ CgksF +   L  H  +H
  462954008  7 FKCSVCGKSFGSYQALGGHKTSH 29
               89********9999888887776 PP
2zf-C2H213.20.00026104126123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k F++   L  H r+H
  462954008 104 HKCSICHKEFPTGQALGGHKRKH 126
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-13731IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-4732IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.011729IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.757734IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-9729No hitNo description
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
PfamPF139120.0835262IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-999126No hitNo description
PfamPF139128.5E-13103128IPR007087Zinc finger, C2H2
SMARTSM003550.038104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162104126IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055062Biological Processphosphate ion homeostasis
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0001047Molecular Functioncore promoter binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAAAAEFKCS VCGKSFGSYQ ALGGHKTSHR AKQPTPPPSS LQVEAPVPIT AALGGHKTSH  60
RAKQPTPPPV EAPVPPPAEL IREPATSSTA ASSDGAAAPN GRVHKCSICH KEFPTGQALG  120
GHKRKHYDGG VGSASEVASS GNGSSAARAF DLNLPAVPEF VWRCTAKAGK MWEEDEEVQS  180
PLAFKKPRLL MTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00622PBMTransfer from AT5G04340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5960642e-49KT596064.1 Zoysia japonica cultivar Companion C2H2-type zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644480.12e-77zinc finger protein 1
SwissprotQ424302e-72ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0A9JD941e-84A0A0A9JD94_ARUDO; Uncharacterized protein
STRINGGRMZM2G035103_P019e-77(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.12e-20zinc finger of Arabidopsis thaliana 6