PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954109
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 232aa    MW: 25485.9 Da    PI: 9.9656
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954109genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.44.5e-193074145
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               k+i +  +rqv fskRr+g++KKA+ LS LC+a vav+ +s+ gk
  462954109 30 KPIASMEKRQVCFSKRRAGLFKKASDLSMLCGAHVAVVAYSPGGK 74
               6799999***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-272281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.6512282IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-262295IPR002100Transcription factor, MADS-box
CDDcd002652.08E-322395No hitNo description
PRINTSPR004042.0E-152444IPR002100Transcription factor, MADS-box
PfamPF003191.3E-223278IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-154459IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-155980IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTEEGSFGEA REDWKRKKKK TMGRQKIEMK PIASMEKRQV CFSKRRAGLF KKASDLSMLC  60
GAHVAVVAYS PGGKPFVFGH PSVQAVIDRF TDASSEPATA AGGGXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXDASRSLPE LLDMRGQLER VQAEVAERAQ ELMAKEAMMQ RATSTDIVGD  180
GVFRGRRLSR SGGHGHADDD DAGRRQCWPR AAFRSDDVAT SSAAVSALQP LL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954109
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-25AGAMOUS-like 61