PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954133
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 926aa    MW: 102220 Da    PI: 5.8196
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954133genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.14e-24134235199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        +++++  ++l  +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  462954133 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLL 229
                99*****************************8544444..49************************************************..7777778* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  462954133 230 LGIRRA 235
                *99997 PP
2Auxin_resp121.37.4e-40260343183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaast+s F+++YnPras+seFv+++ k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
   462954133 260 AAHAASTNSRFTIFYNPRASPSEFVIPLTKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-43126249IPR015300DNA-binding pseudobarrel domain
CDDcd100175.91E-22133234No hitNo description
PfamPF023629.7E-23134235IPR003340B3 DNA binding domain
SMARTSM010194.9E-25134236IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155134236IPR003340B3 DNA binding domain
PfamPF065071.1E-34260343IPR010525Auxin response factor
SuperFamilySSF542777.85E-8775860No hitNo description
PfamPF023091.2E-7780869IPR033389AUX/IAA domain
PROSITE profilePS5174524.81784868IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MKLSPSDAGG LPEQPASPEE AEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHGEQV  60
AASTNKEMEA QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP  120
ADLGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSQQPP AQELFAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLTKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL  360
WDIEPLTTFP MYPSPFALGL KRPWPTGLPS LYGAKDDGLA SSLMWLRGSA NPGFQSLNFG  420
GLGSSPWMQP RQDNSLLGLQ PDMYQTIAAA AALQSSAKQI SPAVMQFQQP QNTVGRSPLL  480
SSQILQQIQP QVQQLYHQNV NDNTIQGHSQ SEYLQQQLQH CQSFNEQKLH LQPQEQQHES  540
HDHHHQQQGV QSPQNQQIQQ QKHLPNFQSL PNALPFFSQF SSATQSPAST LPTVSAFSQQ  600
QNIPVTNNGS LMPSDLSAMH EMLRPLPSEA VSSISGVATT PVPVSDPWSS KRVAVESVIP  660
SRPNVVSPPI EQFDMAPCSV PQSSALAPLP GRECLVDQDG SSDPQNHLLF GVTIDSQSLL  720
MQGGIPSLQN DTGSSTIQYS TSSFMSPSQN EFPLNQALTN PGCLDESGYV PCAESSEKVN  780
ELPATFVKVY RSGTFGRLLD ITRFNSYDEL RSEVGRLFGL EGQLEDPLRS GWQLVFVDRE  840
DDVLLVGDDP WQEFVNSVSC IKILSPEEVQ QMGKQGIQLL SSAPARRLGN GCDSYMSRQE  900
SRNLSTGMAP VGSVDCYRDD YQCYIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612736451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823935.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2S3GLJ50.0A0A2S3GLJ5_9POAL; Auxin response factor
STRINGSb04g004430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]