PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462954725

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 152aa MW: 16921.2 Da PI: 9.5951

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462954725	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.9	2.4e-15	62	141	1	86
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k++t+s+v+ +l lp +f+++h kk + +tl +e+ + +e + ++++ l++GW++F +n+L +gD +vF+l++ 462954725 62 FVKAMTQSHVTGGFWLGLPIDFCRKHLPKK--DEHITLVNEDDELFETLY--LASKRG--LSAGWRGFSIQNNLVDGDCLVFELTE 141 89**********************5443..446***********..666666..9********************864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.12E-21	56	145	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.5E-17	56	145	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.17E-21	60	141	No hit	No description
PROSITE profile	PS50863	10.532	62	152	IPR003340	B3 DNA binding domain
SMART	SM01019	4.4E-13	62	151	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-13	62	141	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MCSEGPAASP TFHRSPSTAR SSGRGRRTDL DNRVYATEAA RTYAINKAEK LEKGLKSRSP 60 RFVKAMTQSH VTGGFWLGLP IDFCRKHLPK KDEHITLVNE DDELFETLYL ASKRGLSAGW 120 RGFSIQNNLV DGDCLVFELT EPRIFKGLGG MS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462954725

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136712.1	3e-57	uncharacterized LOC100216848
Refseq	XP_008676667.1	3e-57	uncharacterized protein LOC100216848 isoform X1
Swissprot	Q69V36	3e-53	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A1D6PU23	2e-56	A0A1D6PU23_MAIZE; B3 domain-containing protein
TrEMBL	A0A3L6F2J4	1e-55	A0A3L6F2J4_MAIZE; B3 domain-containing protein
TrEMBL	B4FK06	8e-56	B4FK06_MAIZE; ABI3VP1 transcription factor
TrEMBL	C0P906	2e-56	C0P906_MAIZE; Uncharacterized protein
STRING	GRMZM2G106673_P02	1e-56	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-44	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]