PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462955182

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 168aa MW: 19248.8 Da PI: 9.4529

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462955182	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.4	9.3e-17	11	97	13	99
TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvfrk 99 ++r+v++kk+a +h +++s+++tl+ + + ++W+ ++ y+++++r ++l++ W +Fv +n+++ gD+++F + gr++f+++v ++r+ 462955182 11 NCRIVISKKYAFTHF--PHKSMDVTLQRPGNsKKWQPRF-YKRNDNRlCMLKGQWLDFVCDNHVQKGDICLFLPIkGRRKFTFMVYLLRT 97 79*******9997..56899**5555***.88888888*********************77355*****99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	3.44E-19	1	93	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.4E-16	1	96	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.575	1	98	IPR003340	B3 DNA binding domain
SMART	SM01019	3.3E-5	1	98	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.51E-17	2	96	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	8.4E-15	11	97	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MTKSTIGDAI NCRIVISKKY AFTHFPHKSM DVTLQRPGNS KKWQPRFYKR NDNRLCMLKG 60 QWLDFVCDNH VQKGDICLFL PIKGRRKFTF MVYLLRTSAS GSSRVETGFE RTGPHYGRSS 120 TKMASTVHIK EESTEGENVS MENGKHETSE EYQESDSGIN VSMENGMH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462955182

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679276.1	1e-50	B3 domain-containing protein Os03g0619600
Refseq	XP_022685401.1	8e-51	B3 domain-containing protein Os03g0619800-like, partial
Swissprot	Q6AV22	9e-38	Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBL	A0A3L6TPZ3	4e-50	A0A3L6TPZ3_PANMI; B3 domain-containing protein
TrEMBL	K4AJW8	9e-50	K4AJW8_SETIT; Uncharacterized protein
STRING	Si039191m	2e-50	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]