PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462955458
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 282aa    MW: 29647.9 Da    PI: 6.6595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462955458genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.51.2e-22105163359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                Dg+ WrKYGqK+++g ++pr YYrC+++  gC ++++v+r+++ p + ei Y geH+++
  462955458 105 DGFIWRKYGQKDINGHNHPRLYYRCAYKnqGCAATRRVQRARDAPAAYEIAYYGEHTCR 163
                9**************************9999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-2397163IPR003657WRKY domain
PROSITE profilePS5081119.80798160IPR003657WRKY domain
SuperFamilySSF1182904.45E-2299163IPR003657WRKY domain
SMARTSM007749.6E-29103164IPR003657WRKY domain
PfamPF031064.6E-24105163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASAGPDALV LELMTMGQQS AAHLGALLRA ASPASPHQEL ASEILRCCGR IIAALTANGA  60
SGGKKRKAAE RNSATAACSP ATPPRKRSRG EEARSVVTSA TTTVDGFIWR KYGQKDINGH  120
NHPRLYYRCA YKNQGCAATR RVQRARDAPA AYEIAYYGEH TCRGAAACQD AAALPPPTVV  180
DFGSNAWGCG TAPAASEEHP WSWDGDMSSQ GGWSSSSTAS SEAHTMVDDT ARVVEAPTGA  240
APCHASDPVT EFLDGCFDWE SLINDVPFDF GALHHAANAS VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-181051631069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462955458
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817680.11e-107probable WRKY transcription factor 66
TrEMBLA0A2T7DF511e-106A0A2T7DF51_9POAL; Uncharacterized protein
STRINGPavir.Ea03258.1.p1e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-21WRKY DNA-binding protein 46