PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462955651
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 131aa    MW: 14568.4 Da    PI: 10.9088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462955651genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-3067125259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+++WrKYGqK++kgs+fpr+YYrC+s  gCp++k+ver+a dp ++++tYe +H+h+
  462955651  67 ADEWSWRKYGQKPIKGSPFPRGYYRCSSVkGCPARKHVERDAADPATLIVTYEADHRHD 125
                69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-3258126IPR003657WRKY domain
PROSITE profilePS5081131.21561127IPR003657WRKY domain
SuperFamilySSF1182901.57E-2562125IPR003657WRKY domain
SMARTSM007741.5E-3466126IPR003657WRKY domain
PfamPF031062.1E-2568124IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MGRGEARKID PSSFKFKGYD SQKSSQPNPK HKPRRRKNHH RVDPSRLSSA AATRGGVGAS  60
SRADIPADEW SWRKYGQKPI KGSPFPRGYY RCSSVKGCPA RKHVERDAAD PATLIVTYEA  120
DHRHDAAALK A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2256128778Probable WRKY transcription factor 4
2lex_A3e-2256128778Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236PRRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462955651
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046486e-70AP004648.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_H02.
GenBankAP0149646e-70AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCT8359586e-70CT835958.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI102B05, full insert sequence.
GenBankCT8359596e-70CT835959.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI103A11, full insert sequence.
GenBankCT8419366e-70CT841936.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103L12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151725.24e-35uncharacterized protein LOC100285361
SwissprotQ6IEN11e-33WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLK7TVL88e-34K7TVL8_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGPavir.Fb01342.1.p2e-36(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-35WRKY DNA-binding protein 11