PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956015
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 994aa    MW: 112253 Da    PI: 6.0602
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956015genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3136.6e-962014922295
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cAea+s++  e+ ++l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al++se +   s e l+++k++++++P++kf++++aN a
  462956015 201 KQLLTRCAEALSEERIEEFHKLVQEARGVVSITGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCSEPK---SNELLSYMKILYNICPYFKFGYMAANGA 297
                689*****************************************************************9...99************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L+++ ee+++p+ef++l     ++++ e+L+++pg
  462956015 298 IAEALRNEDRIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEfaRGEGLDIVGKMLKSMSEEFKIPLEFTPL-PVYATQVTKEMLEIRPG 396
                *************************************************99999***************************6.77788999********* PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                Ea+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yysa+f+s++a+++r++++ri+vE+++l+++i 
  462956015 397 EAVAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFTETMDYYSAMFESIDANMARDKKDRINVEQHCLAKDIN 492
                *********************************************************************************************995 PP
2GRAS312.68.5e-964957862295
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cAea+s++  e+ ++l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al++se +   s e l+++k++++++P++kf++++aN a
  462956015 495 KQLLTRCAEALSEERIEEFHKLVQEARGVVSITGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCSEPK---SNELLSYMKILYNICPYFKFGYMAANGA 591
                689*****************************************************************9...99************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L+++ ee+++p+ef++l     ++++ e+L+++pg
  462956015 592 IAEALRNEDRIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEfaRGEGLDIVGKMLKSMSEEFKIPLEFTPL-PVYATQVTKEMLEIRPG 690
                *************************************************99999***************************6.77788999********* PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                Ea+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yysa+f+s++a+++r++++ri+vE+++l+++i+
  462956015 691 EAVAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFTETMDYYSAMFESIDANMARDKKDRINVEQHCLAKDIM 786
                *********************************************************************************************996 PP
3GRAS235.32.8e-72787993165373
       GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                L+++ ee+++p+ef++l     ++++ e+L+++pgEa+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yy
  462956015 787 LKSMSEEFKIPLEFTPL-PVYATQVTKEMLEIRPGEAVAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFTETMDYY 885
                78899***********6.77788999************************************************************************** PP

       GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                sa+f+s++a+++r++++ri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGF+p+pls+++++ +k ll+ ++ d y++ee++g+++lgWk+
  462956015 886 SAMFESIDANMARDKKDRINVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWKN 984
                ******************************************************************************999.55**************** PP

       GRAS 365 rpLvsvSaW 373
                r+L+s+SaW
  462956015 985 RKLISASAW 993
                ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.392174471IPR005202Transcription factor GRAS
PfamPF035142.3E-93201492IPR005202Transcription factor GRAS
PROSITE profilePS5098561.13468975IPR005202Transcription factor GRAS
PfamPF035142.9E-93495786IPR005202Transcription factor GRAS
PfamPF035149.6E-70787993IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MDLQQLLKYR LTCANVFYEF PTENNLANSH WPASPLKSEF SNSPYTPLSS QLECDNLSAL  60
SNTPDNQSST ETISAQPISP LEADSSQRQA GIILRENIQV GPDRLYATSR HNMQHALREI  120
ETVLMAPDAD DAATGTKHEI EENKPAQLMR QRSRTCSHES RQPSPGVVWP QFASGYPSAS  180
YEFRPEKRQR ELREDPQNIV KQLLTRCAEA LSEERIEEFH KLVQEARGVV SITGEPIQRL  240
GAYLLEGLVA RHGNSGTNIY RALKCSEPKS NELLSYMKIL YNICPYFKFG YMAANGAIAE  300
ALRNEDRIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEF ARGEGLDIVG  360
KMLKSMSEEF KIPLEFTPLP VYATQVTKEM LEIRPGEAVA VNFTLQLHHT PDESVDVNNP  420
RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFTETMDY YSAMFESIDA NMARDKKDRI  480
NVEQHCLAKD INIVKQLLTR CAEALSEERI EEFHKLVQEA RGVVSITGEP IQRLGAYLLE  540
GLVARHGNSG TNIYRALKCS EPKSNELLSY MKILYNICPY FKFGYMAANG AIAEALRNED  600
RIHIIDFQIA QGTQWITLIQ ALAARPGGPP HVRITGIDDP VSEFARGEGL DIVGKMLKSM  660
SEEFKIPLEF TPLPVYATQV TKEMLEIRPG EAVAVNFTLQ LHHTPDESVD VNNPRDGLLR  720
MVKGLSPKVT TLVEQESHTN TTPFLMRFTE TMDYYSAMFE SIDANMARDK KDRINVEQHC  780
LAKDIMLKSM SEEFKIPLEF TPLPVYATQV TKEMLEIRPG EAVAVNFTLQ LHHTPDESVD  840
VNNPRDGLLR MVKGLSPKVT TLVEQESHTN TTPFLMRFTE TMDYYSAMFE SIDANMARDK  900
KDRINVEQHC LAKDIVNIIA CEGKDRVERH ELLGKWKSRL TMAGFRPYPL SSYVNSVIKK  960
LLACYSDKYT LEEKDGAMLL GWKNRKLISA SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-521849933378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462956015
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800433.10.0chitin-inducible gibberellin-responsive protein 1 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2T7EX230.0A0A2T7EX23_9POAL; Uncharacterized protein
STRINGSb02g035680.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-130GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]