PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956145
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 291aa    MW: 31250.2 Da    PI: 6.0657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956145genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.6e-1475126155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  462956145  75 QRMTHIAVERNRRRQMNEYLAALRSLMPES---YVHRGDQASIVSGAIDCVKELE 126
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.62E-1373130No hitNo description
SuperFamilySSF474592.75E-1773142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.07274125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1575143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-1175126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-1180131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTLQEALCAP SSDVLIYDTF NAAACAAASS AGSFLFGNAP PAAVALPAPV EEVPGRRKRR  60
RRERSVKSRE EAESQRMTHI AVERNRRRQM NEYLAALRSL MPESYVHRGD QASIVSGAID  120
CVKELEQQLQ ALEAQKRALA PRSNTAAEER DAAQQTPMSG SADAAAAEED SNDEEDAAPP  180
ASPPSPAPFA GFFRYPQYVW RHARPRKEEE DGGACVGAAE ETSRASGGVA DVEVSVVVDA  240
HASVRVMAPR RPGQLLKMVA GMQALGLAVL HLNVTAANTL VLYTLSLKKE T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15561RRKRRRR
25562RRKRRRRE
35660RKRRR
45663RKRRRRER
57586RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462956145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613234e-76BT061323.1 Zea mays full-length cDNA clone ZM_BFb0135D07 mRNA, complete cds.
GenBankKJ7278454e-76KJ727845.1 Zea mays clone pUT5889 bHLH transcription factor (bHLH134) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319605.15e-94transcription factor bHLH96-like
TrEMBLA0A1B6PMY01e-92A0A1B6PMY0_SORBI; Uncharacterized protein
STRINGPavir.J15346.1.p1e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-30bHLH family protein