PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462956192

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

YABBY

Protein Properties

Length: 242aa MW: 25645.2 Da PI: 7.6216

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462956192	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	149.1	4.1e-46	23	213	6	159
YABBY 6 sseqvCyvqCnfCntilav...........svPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee................lle 73 eq+Cyv+Cn+C+tilav vP +slf++vtvrCGhC++l+svnl ++l+ + l + ll 462956192 23 EQEQLCYVNCNYCDTILAVrmlrcasagavGVPCSSLFMTVTVRCGHCANLFSVNLCSLLlppaaNQLPFGQALLS----PtsphnlldemsfqapsLLS 118 579************853333332222269*******************988764444433333333322....23444766667777777666 PP YABBY 74 elkveeenlksnvekeesastsvssekl........senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 ++ ++ ++++ +++++++s +s++ + +e +++p+ +r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaakn 462956192 119 AEQAASPTVSVSTITSSNNSCGNSMSAMsiapppkpAPQEPQQLPKSATsGNRTTEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKN 213 666666666666666666666666666667999887566677777766558*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.9E-50	23	213	IPR006780	YABBY protein
SuperFamily	SSF47095	2.54E-5	166	211	IPR009071	High mobility group box domain
CDD	cd00084	5.64E-4	178	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSSVTGTFSM DQQHFVQPPP AAEQEQLCYV NCNYCDTILA VRMLRCASAG AVGVPCSSLF 60 MTVTVRCGHC ANLFSVNLCS LLLPPAANQL PFGQALLSPT SPHNLLDEMS FQAPSLLSAE 120 QAASPTVSVS TITSSNNSCG NSMSAMSIAP PPKPAPQEPQ QLPKSATSGN RTTEKRQRVP 180 SAYNRFIKDE IQRIKASNPD ITHREAFSAA AKNDGGECLL FKDGLYAAAA AAAASSMRIA 240 PY

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462956192

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976365.1	4e-98	protein YABBY 5
Swissprot	Q01JG2	3e-85	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	3e-85	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A0A9NXW5	1e-101	A0A0A9NXW5_ARUDO; ZYB14
STRING	Si010859m	1e-97	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	4e-39	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]