PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956909
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 405aa    MW: 43099.7 Da    PI: 8.3422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956909genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09214261455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  462956909 214 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 261
                8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16208275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-9208265No hitNo description
PROSITE profilePS5088815.491210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-16210272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6214261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MAQCGGDLLA RRLHQETVEG LCQGLLSLDD DKFGAMCSAF GYLQEWPDLS AMCGTNLGAP  60
GMAAPGGAAA AASGRGNRTL LSMQRPRGKQ QQPSDLGEIA GKGKQERPKA GAKKKAEVTS  120
PADGQKTDYI HVRARRGQAT DSHSLAERGD RGDSCKRPRG KQQQPSDLGE IAGKGKQERP  180
KAGAKKKAEV TSPADGQKTD YIHVRARRGQ ATDSHSLAER VRRERISERM RYLQELVPGC  240
SKVTGKAGML DEIINYVQSL QKQVEFLSMK IAASNPVVSF DIVEDLFGRQ LKQACNSAAS  300
PAMALSTGQL DPSCLQMSPM QPMQLPAGCP GYGLEMVLNS PYTPAQGGQM PPASGAPNAS  360
CLNVNGAAGG AAAWDIASQN LFSGFDAQFQ SDESDCLLDN LKMEM
Cis-element ? help Back to Top
SourceLink
PlantRegMap462956909
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667151e-140BT066715.1 Zea mays full-length cDNA clone ZM_BFb0058C16 mRNA, complete cds.
GenBankKJ7268611e-140KJ726861.1 Zea mays clone pUT3402 bHLH transcription factor (bHLH29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813679.11e-135transcription factor bHLH49-like
TrEMBLA0A0A9CZD01e-161A0A0A9CZD0_ARUDO; Uncharacterized protein
STRINGGRMZM2G101350_P021e-133(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-38cryptochrome-interacting basic-helix-loop-helix 1