PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462957244
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 330aa    MW: 36236.1 Da    PI: 6.5278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462957244genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++rWT+eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
        462957244  5 KQRWTAEEEAALKAGVAKHGPGKWRTILRDPEfsallRLRSNVDLKDKWRNL 56
                     79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.946161IPR017930Myb domain
SuperFamilySSF466893.45E-15259IPR009057Homeodomain-like
SMARTSM007171.5E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13556IPR009057Homeodomain-like
PfamPF002499.7E-9556IPR001005SANT/Myb domain
CDDcd116602.18E-19656No hitNo description
SuperFamilySSF467851.03E-5121159IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.6E-7122159IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGAPKQRWTA EEEAALKAGV AKHGPGKWRT ILRDPEFSAL LRLRSNVDLK DKWRNLSVTA  60
GGYGSREKAR LALKKGRRVP KVTAEPMEVD EDNMDNAHNA VFDAQPLAMV VEPLQLEDSP  120
DKSVARLDDL ILEAIKTIKE ASGSNKAAIA AYIEVNQKYR IAPTSPSVGG KSTKMYSAEE  180
MNGQNNVKQL TKPQVDAELD KMKCMTKEEA AAFAARAVAE AEIAIAEAEE AARVAEAAET  240
DAEAAKAFLE AVTATIKNRN AATMVEHTHY PFSRITTDIC RYINHTTDST SINADASSLL  300
ILFYPCRLDD FSQWNLLRQH GCSAAKLLFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16978RLALKKGRRV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462957244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818200.11e-126single myb histone 1
SwissprotB4FT401e-110SMH2_MAIZE; Single myb histone 2
TrEMBLA0A3L6SQP01e-131A0A3L6SQP0_PANMI; Single myb histone 1-like
STRINGPavir.Ea02064.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-53telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]