PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462957301
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 75aa    MW: 8572.9 Da    PI: 12.0139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462957301genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-098332148
                     TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48
                      + W++Ia++++ gRt++++k+ w+++l
        462957301  8 HR-WSAIAARLP-GRTDNEIKNVWHTHL 33
                     45.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.81E-5133No hitNo description
PROSITE profilePS5129413.195137IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-13534IPR009057Homeodomain-like
SuperFamilySSF466891.25E-8737IPR009057Homeodomain-like
PfamPF002492.5E-7733IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MCSELFEHRW SAIAARLPGR TDNEIKNVWH THLKKRLEPS KQVAAVANNK KQKKPAAGSP  60
PPRSPCRPSG RRRHR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462957301
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398842e-37BT039884.1 Zea mays full-length cDNA clone ZM_BFc0049A07 mRNA, complete cds.
GenBankFP0939542e-37FP093954.1 Phyllostachys edulis cDNA clone: bphyem107b06, full insert sequence.
GenBankHQ8587092e-37HQ858709.1 Zea mays clone UT1165 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824869.11e-16transcription factor MYB4-like
SwissprotQ7XBH48e-16MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A1D8F0K43e-17A0A1D8F0K4_9POAL; MYB protein
STRINGSi010814m1e-15(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3778823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.21e-16myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]