PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462957694

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 26929.2 Da PI: 5.3474

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462957694	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.2e-19	35	88	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k 462957694 35 KKRRLAADQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 88 4557899**********************************************9 PP
2	HD-ZIP_I/II	126.1	1.6e-40	34	123	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+++qv++LE+sFe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+dy aL+++ydal++++++L++++++L +e 462957694 34 EKKRRLAADQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQMERDYVALRHSYDALRADHDALRRDKDALLAE 123 69***********************************************************************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-19	14	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.422	30	90	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.23E-18	30	92	IPR009057	Homeodomain-like
SMART	SM00389	2.1E-18	33	94	IPR001356	Homeobox domain
Pfam	PF00046	2.6E-16	35	88	IPR001356	Homeobox domain
CDD	cd00086	9.59E-18	35	91	No hit	No description
PROSITE pattern	PS00027	0	65	88	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.7E-13	90	123	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MMERDDVVAA GAYNDEEEED EDDDLGAGRG GLGEKKRRLA ADQVRALERS FEADNKLDPE 60 RKARIARDLR LHPRQVAVWF QNRRARWKTK QMERDYVALR HSYDALRADH DALRRDKDAL 120 LAEARPRAAA GAATAAVYKQ DGSTDSDSSA VFNEEASPYS GGAAATPTAF DHHHHNPHLH 180 PSFAAGFTSF LASSSALSSS FPSMYSGGGS HLVDQEADHG LLGAADGFFA EDQHGTGLGS 240 WYGGEGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	90	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462957694

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099753	1e-94	FP099753.1 Phyllostachys edulis cDNA clone: bphyem212a11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141777.1	4e-83	uncharacterized protein LOC100273913
Refseq	XP_008668033.1	4e-83	putative homeobox DNA-binding and leucine zipper domain family protein isoform X1
Swissprot	Q338Z7	4e-73	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	A0A3Q8H965	2e-82	A0A3Q8H965_FESAR; Class I homeodomain-leucine zipper protein 8
STRING	Pavir.J35191.1.p	3e-83	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	6e-33	homeobox protein 16

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]