PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958071
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 442aa    MW: 50706.5 Da    PI: 8.3541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958071genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05833123
               EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
               ++C    C+++Fs k n++rHi+  H
  462958071  8 FSCAvdGCDRRFSIKANMQRHIKEiH 33
               789999*****************988 PP
2zf-C2H218.94.2e-064568123
               EEET.TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp.dCgksFsrksnLkrHirtH 23
               ++C+  C+ksF+  s Lk+H  +H
  462958071 45 FVCKeGCNKSFKYLSKLKKHEESH 68
               89******************9988 PP
3zf-C2H216.23.1e-05135159223
                EET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                kC+   C  +Fs+ksnL++H++  H
  462958071 135 KCTfeGCEHTFSNKSNLTKHMKAcH 159
                799999****************955 PP
4zf-C2H216.62.2e-05319343223
                EET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                kC+   C  +Fs+ksnL+rH++  H
  462958071 319 KCTfeGCEHTFSNKSNLTRHMKAcH 343
                799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0027833IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-7834IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.406838IPR007087Zinc finger, C2H2
SuperFamilySSF576674.12E-7834No hitNo description
PROSITE patternPS0002801033IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-54368IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.144568IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5544568IPR007087Zinc finger, C2H2
PROSITE patternPS0002804768IPR007087Zinc finger, C2H2
SMARTSM003558.276101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028078101IPR007087Zinc finger, C2H2
SMARTSM0035515104125IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.55E-8119176No hitNo description
SMARTSM003550.012134159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884134164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6135159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-5160187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.9165191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167191IPR007087Zinc finger, C2H2
SMARTSM003558.2260285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262285IPR007087Zinc finger, C2H2
SMARTSM0035515288309IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.51E-8303360No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6303340IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0082318343IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.988318348IPR007087Zinc finger, C2H2
PROSITE patternPS000280320343IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-5342371IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.9349375IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280351375IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLTHQGKFSC AVDGCDRRFS IKANMQRHIK EIHDDENAAK SNQQFVCKEG CNKSFKYLSK  60
LKKHEESHVK LNYVEVVCCE PGCMKMFTNV ECLRAHNQSC HQYIQCEICG EKHLKKNIKR  120
HLQAHEEVPS SERMKCTFEG CEHTFSNKSN LTKHMKACHD NVKPFSCRFA GCDKAFTYKH  180
VRDNHEQSSA HVYIEGDFEE IDAQLQSRPR GGRKRKSLTV ETLTRKRVTI PGQASATDDG  240
VEYLRWLLSG GDVKLNYVEV VCCEPGCMKM FTNVECLRAH NQSCHQYIQC DICGEKHLKK  300
NIKRHLQAHE EVPSSERMKC TFEGCEHTFS NKSNLTRHMK ACHDNVKPFS CRFAGCDKAF  360
TYKHVRDNHE QSSAHVYIEG DFEEIDAQLQ SRPRGGRKRK ALTVETLTRK RVTIRGEASA  420
TDDGVEYLRW LLSGGDGSSQ NL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391399RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958071
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795605.11e-156transcription factor IIIA-like isoform X1
RefseqXP_025795613.11e-157transcription factor IIIA-like isoform X2
SwissprotQ84MZ41e-77TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2T7F0W91e-155A0A2T7F0W9_9POAL; Uncharacterized protein
STRINGSi020193m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.14e-81transcription factor IIIA