PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958166
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 1216aa    MW: 137493 Da    PI: 8.342
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958166genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.82.9e-2010281085159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                 ldDg+ W KYGqK+   ++++rsYYrC + gC +k++v+ s+++p++ ei Y g+H+++
  462958166 1028 LDDGFLWHKYGQKKLS-TRNSRSYYRCFHIGCGAKRQVQVSDDNPSMYEISYYGNHTCR 1085
                 58************85.6899************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525406.81E-59159428IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.5E-18172345IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.7E-53175455IPR002182NB-ARC
PRINTSPR003645.4E-17195210No hitNo description
PRINTSPR003645.4E-17267281No hitNo description
PRINTSPR003645.4E-17363377No hitNo description
SuperFamilySSF520581.12E-18525872IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.2E-13592733IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003645.4E-17665681No hitNo description
PROSITE profilePS514507.735669690IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.103.2E-13775823IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.802.6E-1910211085IPR003657WRKY domain
PROSITE profilePS5081114.88310231087IPR003657WRKY domain
SuperFamilySSF1182904.32E-1910251086IPR003657WRKY domain
SMARTSM007742.5E-2310281086IPR003657WRKY domain
PfamPF031064.5E-1910291085IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1216 aa     Download sequence    Send to blast
MEAPIFSLPG RLEALLRHGY VLPKGAEDEI RFIKRDMEEV VAILHGQRNK KPEEYAMAAW  60
TKEARELSYD MEDFIDQYEH AAAGFQSLSI RRNSRRKIIH RHRSNTTTRL PSNLRQRLWM  120
TNKIREFSVR VQEVLQRHSV YNLGGAAGIS ASFRSWHPRP SWNDTRPLVG IDAAMNKLEE  180
WMLGMHDAEQ EKLKMVSIVG FGGVGKTTLA NELYHKVGQQ FECRAFIRMS RKPDMRRIFI  240
SMLSQVRPHL TPDNWKVHSL ISTIRTHLQD KRYLIIIDDL WAMSTWDIIK YALPENNSGS  300
RILTTTEIED VALQSCGYDS KYVFKMKPLN ADDSRELFFS TVFGPRECPP ELKDVSCDII  360
RKCGGLPLAI VIIASLLASQ LDIKEQWDNL NNSLGHILMT NPAWEGMKQV LNLSYDNLPQ  420
NLKVCMLYMS MYPEGDIMLK DDLLSQWTAE GFICATEGDD REEISRTCFD ELVGQNLIQP  480
VHRNDNGDVL SCIIHPMVLN FIMTYKSIEE NVVTAIHHSE ANMILADKIR RLSLHFGNAE  540
DAMPPTNMRL SQVRTLGFFG VVKCMPAIVE FRLIQVLILH LWGDEGVISL DLTKISELFR  600
LRYLMVASNL TLELRTHMSS VQNLETLKID ARLSAVPSDI VHLPALLRLS LPAETNLPNG  660
FSHMTSLRTL EYFDLSSNSI ENVRSLGSLT NLQDLQLTCS AAQEPCNLKS KMQFLLMRSI  720
LGELSNIKSL TLAPKSSHSV NSPDDAGPTS IISGDDFTST CSPPKFLWRV ELSPRICIFS  780
YLPNCITQLD KLCILKIGVV KIVSNGLEIL RGLPNLNVLS LYIHTKPAES IVIGKTGFSV  840
LKCFKFQCCD PLLEFEPDAM PSLRRLKLCF NASGTYELSK VPVGINNLSG IKEVCAKIGC  900
AGPDETYRAA AEAALKEAIR SGVHATCPRV NVQWANQIFG FMEHRNRLTG KQESETPQQH  960
EILGEGTVKN EDIFEEVSGE NDVSFHNNLI NELRANQSNP ANPSLQIQPR LGIRRKGVEK  1020
VTMVVPRLDD GFLWHKYGQK KLSTRNSRSY YRCFHIGCGA KRQVQVSDDN PSMYEISYYG  1080
NHTCRTSTTP LLTLPAPAAT DTVTTLCNPS RDWGVEKVTM VVPRLDDGFL WHKYGQKKLS  1140
TRNSSFGYAA GVVLKKLLQV LPHRMRGKEA GAGQRRQPLH VRDQLLRQPH LPHLHNAAAH  1200
TPSSCRHRYR DNKLPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C3e-454650348496Disease resistance RPP13-like protein 4
6j5t_F3e-454650348496Disease resistance RPP13-like protein 4
6j5t_G3e-454650348496Disease resistance RPP13-like protein 4
6j5t_L3e-454650348496Disease resistance RPP13-like protein 4
6j5t_O3e-454650348496Disease resistance RPP13-like protein 4
6j5u_A3e-454650348496Disease resistance RPP13-like protein 4
6j5v_A3e-454650348496Disease resistance RPP13-like protein 4
6j5w_A3e-454650348496Disease resistance RPP13-like protein 4
6j6i_C3e-454650348496Disease resistance RPP13-like protein 4
6j6i_F3e-454650348496Disease resistance RPP13-like protein 4
6j6i_G3e-454650348496Disease resistance RPP13-like protein 4
6j6i_L3e-454650348496Disease resistance RPP13-like protein 4
6j6i_O3e-454650348496Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956574.10.0putative disease resistance RPP13-like protein 2 isoform X2
TrEMBLA0A368PZX70.0A0A368PZX7_SETIT; Uncharacterized protein
STRINGSi028710m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-16WRKY DNA-binding protein 46