PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462958228

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 69aa MW: 8136.47 Da PI: 10.8077

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462958228	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.4e-12	21	68	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W E+e l ++v q+G+g+Wk I + + gRt+ ++k++w++ + 462958228 21 WCVLEEETLRKGVVQYGSGNWKDILANNPdvfIGRTPVDLKDKWRNMM 68 6666*****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-14	11	69	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.082	13	69	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-15	15	68	IPR009057	Homeodomain-like
CDD	cd11660	9.01E-17	19	69	No hit	No description
Pfam	PF00249	6.0E-10	20	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MPVSPLQPPE NKNKRRKARK WCVLEEETLR KGVVQYGSGN WKDILANNPD VFIGRTPVDL 60 KDKWRNMMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462958228

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811007.1	8e-37	uncharacterized protein LOC112888859
TrEMBL	A0A0A9NEY3	1e-37	A0A0A9NEY3_ARUDO; Uncharacterized protein
TrEMBL	A0A2S3HLA8	2e-35	A0A2S3HLA8_9POAL; Uncharacterized protein
STRING	Pavir.J08903.1.p	2e-37	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3154	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	2e-12	MYB_related family protein