PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958285
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family DBB
Protein Properties Length: 133aa    MW: 14380.5 Da    PI: 8.0531
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958285genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-072466440
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               r C  +++ +   +C+ +  +lC++C +  H        H++v
  462958285 24 RPCYGCQSAPSVVYCRADAAYLCASCDTRVHAAnrvasrHERV 66
               57999**************************556778788776 PP
2zf-B_box26.31.5e-0865108239
   zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                + r+C+ +e+ ++ l C+ +   lC+ C  + H+       H++
  462958285  65 RVRVCEACERMPAVLVCHADAAALCAICDAQVHSAnplagrHQR 108
                5689*****************************66788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.4E-72168IPR000315B-box-type zinc finger
CDDcd000211.19E-42468No hitNo description
PfamPF006431.1E-52566IPR000315B-box-type zinc finger
PROSITE profilePS501199.5992668IPR000315B-box-type zinc finger
PROSITE profilePS5011910.73664111IPR000315B-box-type zinc finger
PfamPF006435.3E-766110IPR000315B-box-type zinc finger
CDDcd000219.09E-667111No hitNo description
SMARTSM003361.6E-769111IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MNYNSSGNVF KQEVGGEGSC PWARPCYGCQ SAPSVVYCRA DAAYLCASCD TRVHAANRVA  60
SRHERVRVCE ACERMPAVLV CHADAAALCA ICDAQVHSAN PLAGRHQRMP VLPLPAAPIP  120
AASVYLSHQW RWV
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958285
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436860.19e-59zinc finger protein HD1 isoform X1
SwissprotQ965028e-43COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLD3KYU08e-59D3KYU0_9POAL; Zinc-finger type transcription factor
STRINGSb10g010050.13e-58(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56223140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.19e-31CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]