PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958396
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YA
Protein Properties Length: 297aa    MW: 32574.2 Da    PI: 10.2668
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958396genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42e-32191247158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF
  462958396 191 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 247
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-35189250IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.652190250IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-26192247IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-23193215IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860195215IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-23224247IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQRNRSRVGA PPRSQPEQPP NLRSKPLSLR PTPIASSPPA SAPILSRRCS FSSLGRPPFV  60
VQSAPVEIRP QPGSDWVAPF LRRWTIPSVS GDHRAEDQHQ QNKQKQAEPE DQQEASVTSS  120
GSQTMVGTPS ADYVAAYAPH DMAHAMGQFA YPNVDPYYGS LYAAYGGQPM MHPPLVGMHP  180
AGLPLPTDAI EEPVYVNAKQ YNAILRRRQS RAKAESERKL IKGRKPYLHE SRHQHALKRA  240
RGAGGRFLNS KSDDKDENSD SSHKEKQNGV VPRNNGQPSS PTSPNGATSA NQADNRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21190273178NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958396
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443549.11e-130nuclear transcription factor Y subunit A-7
RefseqXP_004963231.11e-130nuclear transcription factor Y subunit A-7
TrEMBLA0A0A9GEL21e-131A0A0A9GEL2_ARUDO; Uncharacterized protein
STRINGPavir.Ca02834.1.p1e-131(Panicum virgatum)
STRINGPavir.J06031.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-37nuclear factor Y, subunit A7