PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958492
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 215aa    MW: 23069.1 Da    PI: 8.6452
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958492genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.81.7e-191493887
   trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
               mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  462958492  1 MRRLGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 49
               899*****************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-12150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRRLGYNRSS KRCKEKWENI NKYFKKVKES NKRRPEDSKT CPYFHQLDAM YRKKRFAGST  60
GSGTSSGALV TAVTASGQAS PSQRELEGKI SNDVGNQNIA GVANVKMAPT TTAAADGTKS  120
QNAEDTVRET NAQLQQQQQQ QQQGFAGDET DSDDDMDGNY ADQGNDGDNM QYKTGFQKPN  180
VMGSSGNAPA PTETAAAATS SAASAPTSST FLAVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958492
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548726e-65BT054872.1 Zea mays full-length cDNA clone ZM_BFc0165O02 mRNA, complete cds.
GenBankBT0677676e-65BT067767.1 Zea mays full-length cDNA clone ZM_BFc0150E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953287.13e-71trihelix transcription factor GTL1 isoform X1
RefseqXP_012699251.13e-71trihelix transcription factor GTL1 isoform X1
TrEMBLA0A0A9DG783e-83A0A0A9DG78_ARUDO; Uncharacterized protein
STRINGSi016578m1e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-31Trihelix family protein