PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958519
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 152aa    MW: 16070.4 Da    PI: 10.3951
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958519genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.26.2e-2069103135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  462958519  69 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 103
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-1562125No hitNo description
SMARTSM004012.4E-1863117IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.1896399IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-1667101IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.48E-1468125No hitNo description
PROSITE patternPS0034406994IPR000679Zinc finger, GATA-type
PfamPF003206.5E-1869103IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MTHHQALISS APAFSPASHF LHAAPSTSPL LFTHSSSTSA SCSPAVAPSM ASFVAHHHGS  60
LAVQGDRRCS HCGVQKTPQW RAGPEGAKTL CNACGVRYKS GRLLPEYRPA CSPTFVSTIH  120
SNSHRKVLEM RRKKEGVLVV VPTATAAAVA SF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9471366e-86EU947136.1 Zea mays clone 328769 mRNA sequence.
GenBankEU9554326e-86EU955432.1 Zea mays clone 1531924 hypothetical protein mRNA, complete cds.
GenBankKJ7278516e-86KJ727851.1 Zea mays clone pUT5896 C2C2-GATA transcription factor (GATA6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199372.13e-50GATA transcription factor 5-like
TrEMBLA0A453P6D84e-50A0A453P6D8_AEGTS; Uncharacterized protein
STRINGTraes_2AL_0EB34993E.12e-48(Triticum aestivum)
STRINGTraes_2BL_6899C8ABD.11e-48(Triticum aestivum)
STRINGTraes_2DL_EEF2E71FA.14e-49(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-42GATA transcription factor 5