PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958552
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family DBB
Protein Properties Length: 213aa    MW: 23304.5 Da    PI: 8.3535
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958552genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.87.9e-07443538
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                C+ +  + ++ fC  ++  lC+ C    H+       H+
  462958552  4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43
               7*****************************7677777776 PP
2zf-B_box30.38.8e-10118159338
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                ++ C+ ++ek+  lfC++++  lC+dC ++ H        Ht
  462958552 118 PPLCDICQEKRGLLFCKEDRAILCRDCDVSVHTTseltmrHT 159
                689*****************************6566777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
CDDcd000211.44E-4335No hitNo description
PfamPF006439.6E-6444IPR000315B-box-type zinc finger
SMARTSM003360.096499IPR000315B-box-type zinc finger
PROSITE profilePS501199.812116163IPR000315B-box-type zinc finger
SMARTSM003369.7E-13116163IPR000315B-box-type zinc finger
PfamPF006436.9E-8118159IPR000315B-box-type zinc finger
CDDcd000214.38E-7119163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLSP SPSASSSGSA  60
AHQPSPPLCD ICQPALCDSC DRRVHRANKL AGKHRRFSLL SPSPSASSSG SAAHQPSPPL  120
CDICQEKRGL LFCKEDRAIL CRDCDVSVHT TSELTMRHTR FLLTVEQLYC ESAVTGDARI  180
HRERWVPQMS YAGMDMAGSK RPRTTSAASY SYW
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958552
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822828.11e-51B-box zinc finger protein 20-like isoform X1
TrEMBLA0A1E5URW64e-55A0A1E5URW6_9POAL; B-box zinc finger protein 21
STRINGSb04g033440.15e-49(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.15e-26DBB family protein