PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958579
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 221aa    MW: 24914.3 Da    PI: 8.4386
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958579genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.71.2e-127523683
   trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
                k+++ g++rs+k+Ckek+en+ k+y+++ke++ +r++++s  +++f+
  462958579  7 TKLAALGYSRSAKKCKEKFENVDKYYRRTKESRAGRQDGKS--YRFFS 52
               567999*****************************866665..89985 PP
2trihelix31.64.2e-1052914687
   trihelix 46 spkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
               s+k+Ckek+en+ k+y+++ke++ +r+ ++s  +++f++lea
  462958579 52 SAKKCKEKFENVDKYYRRTKESRAGRQGGKS--YRFFSELEA 91
               79***********************866665..******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-8552No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSSFVVTKLA ALGYSRSAKK CKEKFENVDK YYRRTKESRA GRQDGKSYRF FSAKKCKEKF  60
ENVDKYYRRT KESRAGRQGG KSYRFFSELE ALHAAAPQRQ QQAAGMATVH AADPQPSATM  120
AWTTAPAPLG PHVPSLPDLS FSSGSESDSD DEFDDDDDED ELGKGEAGEC GKEMMALFEG  180
MIRQVTEKQD AMQRAFLETM EKWEAERTXX AAPPRRPATR R
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0864863e-48BT086486.2 Zea mays full-length cDNA clone ZM_BFc0171L17 mRNA, complete cds.
GenBankBT0882083e-48BT088208.2 Zea mays full-length cDNA clone ZM_BFc0065B03 mRNA, complete cds.
GenBankKJ7280323e-48KJ728032.1 Zea mays clone pUT6172 trihelix transcription factor (THX16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685538.14e-46trihelix transcription factor GTL1 isoform X3
TrEMBLA0A1D6HER04e-47A0A1D6HER0_MAIZE; GT-2-like 1
STRINGSi016578m4e-45(Setaria italica)
STRINGGRMZM2G169580_P014e-45(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.16e-18GT-2-like 1