PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958705
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 110aa    MW: 11819.4 Da    PI: 5.7584
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958705genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.77.1e-1566103135
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkaded 35 
                ql++fw++q   ie +tdfknh+lPlarikki+kaded
  462958705  66 QLQMFWAEQyreIEATTDFKNHNLPLARIKKIMKADED 103
                89******99999***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.85E-664104IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.9E-881103IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MENKSNTPPP PPPVMGAPVA YPPAAYPAPG AVAYPPAAAY PGPGAVAYPP AVGQTSTQQG  60
TATQQQLQMF WAEQYREIEA TTDFKNHNLP LARIKKIMKA DEDSYGYLML
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1004492e-57FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574700.16e-27nuclear transcription factor Y subunit C-6
TrEMBLI1I8831e-25I1I883_BRADI; Uncharacterized protein
STRINGBRADI3G39280.12e-26(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-15nuclear factor Y, subunit C2