PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959027
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 228aa    MW: 25233.9 Da    PI: 9.7986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959027genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09535131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     +++WT+eE++ l ++v ++G g W+tI +  
        462959027  5 KQKWTQEEEDALRRGVLKHGAGKWRTIQKDP 35
                     79*************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.463159IPR017930Myb domain
SuperFamilySSF466896.36E-11254IPR009057Homeodomain-like
PfamPF002494.1E-7533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10550IPR009057Homeodomain-like
CDDcd116601.19E-13650No hitNo description
SMARTSM005264.6E-635115IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.07E-1250131IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150418.6950121IPR005818Linker histone H1/H5, domain H15
PfamPF005384.3E-753112IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.109.4E-953127IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGAPKQKWTQ EEEDALRRGV LKHGAGKWRT IQKDPEFSPT LSSRSNIDLK WTRYGAMILE  60
ALSELNEPNG SEFNAILGVI EQKLEVHGHP NLRRLLSSKI RRLVDTKKVD KIDNKLYKLP  120
ESFATKTPAP IKASTQKQKD PSKPSKGAKS LGLFAAISPA LEAAAAAAAK VADAEAKAHL  180
AHEHMMEAER ILKMAEDTES LLTLAAEIYD RCSRGEIITV NPVSQREF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945242e-46FP094524.1 Phyllostachys edulis cDNA clone: bphylf024j07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105225.12e-77single myb histone 3
SwissprotQ6WLH42e-78SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0A9PJS44e-77A0A0A9PJS4_ARUDO; Smh4
STRINGPavir.Eb02802.1.p2e-82(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-21telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]