PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959349
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Nin-like
Protein Properties Length: 665aa    MW: 71409.1 Da    PI: 4.8357
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959349genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.41.1e-26430479251
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                ek++ le+l++yFs+ +kdAA++Lgvc+T++KriCRq+GI+RWP+R+i++
  462959349 430 EKTVGLEELQQYFSGRMKDAARSLGVCPTTMKRICRQHGISRWPFRQIAK 479
                7999********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.915411500IPR003035RWP-RK domain
PfamPF020422.7E-24433479IPR003035RWP-RK domain
SuperFamilySSF542772.91E-18557627No hitNo description
SMARTSM006662.8E-19560653IPR000270PB1 domain
PROSITE profilePS5174517.461560653IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.1E-22561627No hitNo description
PfamPF005642.3E-13561635IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MVMEMEADMD RVLERFDLLL DRDGGHGSSP WSDRSRSAGS SAAGAAAGKE ADDDGGGAWT  60
PNVQYYGTGE YARISYALIY DIQAALALPI LDPGTGACLA VIELVTTSPR LRFAAEVDKL  120
CKALQAVALR GSDIGCPVPQ VCNDDAVTRC AEVAMSEVSD ILTTVCEAHK LPLAQAWLRC  180
KHCSTSTEHS ALTAGGAPFH LAADDDEGLR AFREACVEQH LRQGRGGLVE EAAAARGPRF  240
CADVTKYSMD AYPLAHHARF CGLAGCLAVC VEMRRGAAGA SGDGDDDGGR EECVLEFFLP  300
RDCRDGAAQK AAVEAMTATM TERFSNGDLK AITLCGLQEL AFEVVEDDEC VLRPDPAIMD  360
DTPELELHDY GGYERDSEEA DEHPAAAVGS ADVEEPKMDN GEDEQKEDED PKPRVGRRRK  420
KKKIGKRKNE KTVGLEELQQ YFSGRMKDAA RSLGVCPTTM KRICRQHGIS RWPFRQIAKA  480
NNSLDKVKRI FESVQLSPNP VAASASQQAP APATAHHPPA ALPCLSSAPG VASSQGSCQE  540
PPPRRNTTLR KPFHAVNAGV VTIKASYKRD IVRFRVPSSA GVEAVKGEVA KRLNMETDAF  600
DVKYLDDDNE WVLLSCDADF QECLEVVPAL STTSSSSGSG AAQPVVRLMV QEVADSHGSS  660
CGSSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416422RRRKKKK
2417422RRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959349
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823617.10.0protein NLP3-like
TrEMBLA0A2S3GLE70.0A0A2S3GLE7_9POAL; Uncharacterized protein
STRINGPavir.Ab00331.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.15e-82Nin-like family protein