PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462959391

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 578aa MW: 65077.9 Da PI: 6.7426

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462959391	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.7	6.5e-112	207	577	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL++cA+a + +d+++ +lL+++++++s gd+ qRla++f+ +L+arla+++s++y++l++++ts + + ++a+ l++ ++P+ k+sh+ aN + 462959391 207 TTLLIHCAQAAAIDDQRNSIELLKQIRKHSSAVGDAGQRLAHCFADGLEARLAGTGSNIYRSLAAKRTS---TNDIVKAFGLYVTACPFKKVSHFFANMT 303 689**********************************************************999999...78899999**************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 I +a + ++++HiiDf+i++G+QWp L+q L+sR +gppslRiTg++ p++g +e++e+tg+rL+++A++l+vpfe+ + +a +++++++e+L+++++ 462959391 304 IFKASKVASKLHIIDFGIQYGFQWPVLIQLLSSRHGGPPSLRITGIDFPQPGfrPAERIEATGRRLHEYARTLNVPFEYCA-IAAKWDTIQVEDLKINSD 402 ***********************************************9*************************.799*********** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E l+Vn+ +++ +++de+v+ +s+r++vL+++ +++P+++++ + +n++ F++rf eal ++s+lfd+le++ +r++e r +Er + gre+ nv+a 462959391 403 ELLVVNCLFRMRNMMDETVTDDSPRTRVLNTISKMNPHLFIHGVVNGTYNAPFFVTRFKEALFHFSSLFDMLEVNTSRTDELRLLIERDFYGREALNVIA 502 ************************************************************************************************ PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ceg+er+er et+++W+ r +aGF+++pl+e+++k a++ ++k + + + v+e+++++++gWk+r ++++SaW+ 462959391 503 CEGTERIERPETYKQWKLRNLRAGFRQLPLDEDIMKRARYKVSKSYHRDFLVDEDNKWMLQGWKGRIIFALSAWT 577 ******************************************999***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.635	180	557	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-109	207	577	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MATPSPASTT TTELDNSEDS SEAVTDDAVL AYINQFLLDE EFYPVTEASV EDTALLAVEK 60 PFIDILTAVK PTDACEAKSW ITDDCDSSGS IGSHDVSTSN QKFVQSPCEM VKEGAKCAVH 120 KGRKKPHDND LESEERRSKQ TALCEEEVVR EMLDRVLLCT DKNCEFRSPL PADAQIRGGY 180 VKGSGNKRGR RKGRSSAGAE EEAVDLTTLL IHCAQAAAID DQRNSIELLK QIRKHSSAVG 240 DAGQRLAHCF ADGLEARLAG TGSNIYRSLA AKRTSTNDIV KAFGLYVTAC PFKKVSHFFA 300 NMTIFKASKV ASKLHIIDFG IQYGFQWPVL IQLLSSRHGG PPSLRITGID FPQPGFRPAE 360 RIEATGRRLH EYARTLNVPF EYCAIAAKWD TIQVEDLKIN SDELLVVNCL FRMRNMMDET 420 VTDDSPRTRV LNTISKMNPH LFIHGVVNGT YNAPFFVTRF KEALFHFSSL FDMLEVNTSR 480 TDELRLLIER DFYGREALNV IACEGTERIE RPETYKQWKL RNLRAGFRQL PLDEDIMKRA 540 RYKVSKSYHR DFLVDEDNKW MLQGWKGRII FALSAWTS

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MATPSPASTT TTELDNSEDS SEAVTDDAVL AYINQFLLDE EFYPVTEASV EDTALLAVEK  60
PFIDILTAVK PTDACEAKSW ITDDCDSSGS IGSHDVSTSN QKFVQSPCEM VKEGAKCAVH  120
KGRKKPHDND LESEERRSKQ TALCEEEVVR EMLDRVLLCT DKNCEFRSPL PADAQIRGGY  180
VKGSGNKRGR RKGRSSAGAE EEAVDLTTLL IHCAQAAAID DQRNSIELLK QIRKHSSAVG  240
DAGQRLAHCF ADGLEARLAG TGSNIYRSLA AKRTSTNDIV KAFGLYVTAC PFKKVSHFFA  300
NMTIFKASKV ASKLHIIDFG IQYGFQWPVL IQLLSSRHGG PPSLRITGID FPQPGFRPAE  360
RIEATGRRLH EYARTLNVPF EYCAIAAKWD TIQVEDLKIN SDELLVVNCL FRMRNMMDET  420
VTDDSPRTRV LNTISKMNPH LFIHGVVNGT YNAPFFVTRF KEALFHFSSL FDMLEVNTSR  480
TDELRLLIER DFYGREALNV IACEGTERIE RPETYKQWKL RNLRAGFRQL PLDEDIMKRA  540
RYKVSKSYHR DFLVDEDNKW MLQGWKGRII FALSAWTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-50	210	576	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462959391

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793343.1	0.0	scarecrow-like protein 9
Refseq	XP_025793344.1	0.0	scarecrow-like protein 9
Refseq	XP_025793345.1	0.0	scarecrow-like protein 9
Refseq	XP_025793346.1	0.0	scarecrow-like protein 9
Swissprot	Q9XE58	1e-170	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A0A9TYC8	0.0	A0A0A9TYC8_ARUDO; Uncharacterized protein
STRING	Pavir.Ia00281.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13841	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-170	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]