PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462959421

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 225aa MW: 26729.6 Da PI: 9.0044

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462959421	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	192	3.9e-59	8	216	155	364
GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 +e++e+tg+rL+++A+ l+vpfe+++ +a +++++++e+L+++++E l+Vn+ +++ +++de+v+ +s+r++vL+++ +++P+++++ + +n++ F+ 462959421 8 AERIEATGRRLHEYARMLNVPFEYRA-IAAKWDTIQVEDLKINSDEFLVVNCLFRMRNMMDETVTDDSPRTRVLNTISKMNPHLFIHGVVNGTYNAPFFV 106 6899********************.799****************************************************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 +rf eal ++s+lfd+le++ +r++e r +Er + gre+ nv+aceg+er+er et+++W+ r +aGF+++pl+e+++k a++ ++k + + + v+e+ 462959421 107 TRFKEALFHFSSLFDMLEVNTSRTDELRLLIERDFYGREALNVIACEGTERIERPETYKQWKLRNLRAGFRQLPLDEDIMKRARYKVSKSYHRDFLVDED 206 ***************************************************************************************999** PP GRAS 355 sgslvlgWkd 364 ++++++gWk+ 462959421 207 NKWMLQGWKG 216 ******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.083	1	206	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-56	8	216	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MVPGFRPAER IEATGRRLHE YARMLNVPFE YRAIAAKWDT IQVEDLKINS DEFLVVNCLF 60 RMRNMMDETV TDDSPRTRVL NTISKMNPHL FIHGVVNGTY NAPFFVTRFK EALFHFSSLF 120 DMLEVNTSRT DELRLLIERD FYGREALNVI ACEGTERIER PETYKQWKLR NLRAGFRQLP 180 LDEDIMKRAR YKVSKSYHRD FLVDEDNKWM LQGWKGPFSS YQRGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-16	9	215	170	368	Protein SCARECROW
5b3h_A	8e-16	9	215	169	367	Protein SCARECROW
5b3h_D	8e-16	9	215	169	367	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462959421

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981240.1	1e-139	scarecrow-like protein 30
Refseq	XP_022678638.1	1e-139	scarecrow-like protein 30
Swissprot	O80933	2e-97	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A0A9TYC8	1e-142	A0A0A9TYC8_ARUDO; Uncharacterized protein
STRING	Si034627m	1e-139	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13841	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-99	GRAS family protein