PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462959535

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LSD

Protein Properties

Length: 173aa MW: 18677.4 Da PI: 10.3045

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462959535	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	29.7	1.1e-09	72	95	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC t+L Y rGA+++RC++C t 462959535 72 CNGCPTILVYNRGATNIRCPNCRT 95 **********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.6E-9	70	97	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.8E-9	72	95	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.1E-4	108	138	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.6E-6	111	135	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
HRGATHLSRS LSLLSSISAV FRAEPSINPF SLRLGAETAV FGVSRRGMQD QLYCNTFTSV 60 NPSAGKMSEL VCNGCPTILV YNRGATNIRC PNCRTLNSTR SGANQMGQLQ CGRCPTTLAY 120 QLGASTVGCP RCRHVNHVRD ARPQTVLVEN PKTLDDKGKL VSNVAVGVAS WKR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462959535

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320000.1	3e-59	protein LOL4 isoform X3
Refseq	XP_021320001.1	3e-59	protein LOL4 isoform X3
Swissprot	Q84UR0	8e-58	LOL4_ORYSJ; Protein LOL4
TrEMBL	A0A0E0LQX3	1e-56	A0A0E0LQX3_ORYPU; Uncharacterized protein
TrEMBL	C5YMW9	9e-57	C5YMW9_SORBI; Uncharacterized protein
STRING	OPUNC08G01880.1	2e-57	(Oryza punctata)
STRING	Sb07g002500.1	1e-57	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12333	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	1e-22	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]