PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959813
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 292aa    MW: 32097.7 Da    PI: 7.2099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959813genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09161208455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  462959813 161 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALVLDEIINYVQSLQ 208
                8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17155224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-9155212No hitNo description
PROSITE profilePS5088815.447157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-16157222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATFSRIPQQ MEHGLTNASH TMSSYLFCHG AGTDSAIPED ASLEASSAVL DTSPQGTASV  60
DKKTKPRDDS ASLNSAQSKD SKEATKKRGG KRERNSKEMD EEEAPKGYIH VRARRGQATD  120
SHSLAERRGG KRERNSKEMD EEEAPKGYIH VRARRGQATD SHSLAERVRR ERISERMRVL  180
QALVPGCDKV TGKALVLDEI INYVQSLQNQ VEFLSMRIAS LSPVLYGFGM DSDAFSDHTQ  240
KIEGMLHHEA LAMPGSVLNR APSHAIMDTN TSTSSASYEV HGDGGISFHQ EK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855811e-129BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds.
GenBankEU9621211e-129EU962121.1 Zea mays clone 240361 bHLH transcription factor GBOF-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803717.11e-139transcription factor bHLH137-like
TrEMBLA0A2S3H1M21e-138A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBLA0A2T7EUH41e-138A0A2T7EUH4_9POAL; Uncharacterized protein
STRINGPavir.J05063.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-41bHLH family protein