PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462960608

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 232aa MW: 25363.6 Da PI: 7.0613

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462960608	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.5	1.2e-29	4	100	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++C+++p++ p++q +++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q++ 462960608 4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRACLINLITAGPDHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQAAR 100 6***********************99****************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.633	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-23	4	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009739	Biological Process	response to gibberellin

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRACL INLITAGPDH 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAR RARPDTAASF ELVFSRPPSS 120 AVLVDVRQAQ PLSWAPAGQP ASQEYYSASH DAADSNTSVD TVEVSHVSQS GPEPETPREE 180 TDGREVGLDL ALGLLPTVHK TEQSWHVEKD QHDRFDEPAV KLGLGTTASR AR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462960608

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100502	1e-100	FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006643695.1	7e-72	PREDICTED: LOB domain-containing protein 40
Swissprot	Q9M886	2e-60	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	J3KW27	2e-70	J3KW27_ORYBR; Uncharacterized protein
STRING	OB01G11830.1	3e-71	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	6e-63	LOB domain-containing protein 40