PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462960632
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 1164aa    MW: 128853 Da    PI: 6.5782
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462960632genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22126227199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+
  462960632 126 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfsM-QPPA-QEIQARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDEKQQLL 221
                99*****************************954.4444.48************************************************..5688889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  462960632 222 LGIRRA 227
                ***997 PP
2Auxin_resp118.36.4e-39252335183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
   462960632 252 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 335
                 79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-42115255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-19125217No hitNo description
PfamPF023623.5E-20126227IPR003340B3 DNA binding domain
SMARTSM010192.4E-22126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829126228IPR003340B3 DNA binding domain
PfamPF065071.1E-33252335IPR010525Auxin response factor
PfamPF023091.6E-910011087IPR033389AUX/IAA domain
PROSITE profilePS5174527.44810021086IPR000270PB1 domain
SuperFamilySSF542772.35E-710141081No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1164 aa     Download sequence    Send to blast
TGAAVAAGGC EGEKKAPTIN SELWHACAGP LVSLPPAGSL VVYFPQGHSE QVAASMQKDV  60
DAHVPSYPNL PSKLICLLHN VTLHADPETD EVYAQMTLQP VTSYGKEALQ LSELALKQPR  120
PQTEFFCKTL TASDTSTHGG FSVPRRSAEK IFPPLDFSMQ PPAQEIQARD LHDNIWTFRH  180
IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV IFVRDEKQQL LLGIRRANRQ PTNISSSVLS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPTEFVVPFA KYQKALYGNQ ISLGMRFRMM  300
FETEELGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE SAAGERRNRV SIWEIEPVAA  360
PFFICPPPFF GAKRPRQLDD ESSEMENLLK RAMPWLGEEI CIKDPQTQNT IMPGLSLVQW  420
MNMNMQQNSS FSNAAMQSEY LRSLSNPNMQ NMGASDLSRQ LCLQNQILQQ NNIQFNSPKL  480
PQQMQPINEL PKAALPQNQL GGGIKSQEQT QEPSNLQRQQ QSPNQLLPLS QSQTSLVQAQ  540
VLAQSQMQQQ QPPSVTQNLQ PATSHPLLLP HQQQQQQQQQ QQQKLLQQQQ QQQQQQQQQQ  600
QLLLQQQQLQ QQSQLNKMPA QVQNLVNQQM QLPDQQLQLQ LLQKLQQQQQ SLLSQPGVTL  660
AQLPLIQEQQ KLFLDMQHQL SNSHSLSQQQ TMPQQSTKVA SQATPPPPAM QQESPQKLPQ  720
KHVGFADSSQ AAIPPTSVNI VPGAGSPLMT TGATHSVLTE EIPSCSTSPS TANGNHLLQP  780
ALGRSKQCGM MNNEKVPQST APMSIPCSLE AIMAPARLTK ESPKLNSSVK QSSMTSKLPN  840
AGTGPQNFVN GAPPTDFLET ASSATSVWLS QTDGLLHQGF PMSNFNQQQM FKDAPPETEI  900
QGADASNHAL FGINSDGQLG FPMGADGFMS NGIDAAKYEN HISTDIDGNY RIPKDAQQEI  960
SSSMVSQSIG ASDMAFNSID SAINDGAFRT SWPPAAPLKR MRTFTKVYKR GAVGRSIDIS  1020
QFSGYDELKH ALARMFSIEG QLEERQRIGW KLVYKDHEDD ILLLGDDPWE EFVNCVKCIR  1080
ILSPQEVQQM SLDGDLGNNI LPNQACSSSD GGNAWRARCD QNSGNPSTGS YDQFPHMEVG  1140
MDCRINTFLD AEPVAAKMKL DVKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681535647388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462960632
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437545.20.0auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLC5Z9870.0C5Z987_SORBI; Auxin response factor
STRINGSb10g029130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]