PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462960634
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 508aa    MW: 57014.1 Da    PI: 8.1517
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462960634genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.5e-23171272199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+
  462960634 171 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfsM-QPPA-QEIQARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDEKQQLL 266
                99*****************************954.4444.48************************************************..5688889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  462960634 267 LGIRRA 272
                ***997 PP
2Auxin_resp119.92e-39297380183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
   462960634 297 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 380
                 79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-43160300IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-42163286IPR015300DNA-binding pseudobarrel domain
CDDcd100176.02E-20170262No hitNo description
SMARTSM010192.4E-22171273IPR003340B3 DNA binding domain
PfamPF023621.1E-20171272IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829171273IPR003340B3 DNA binding domain
PfamPF065073.6E-34297380IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MPHRPGWFAA ADDVAYRFMR ELPGADFKAR AHGVDSMMER LVRPPVRLVG LSSPCPGEKK  60
APTINSELWH ACAGPLVSLP PAGSLVVYFP QGHSEQVAAS MQKDVDAHVP SYPNLPSKLI  120
CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQPRPQTEF FCKTLTASDT  180
STHGGFSVPR RSAEKIFPPL DFSMQPPAQE IQARDLHDNI WTFRHIYRGQ PKRHLLTTGW  240
SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA  300
AANNSPFTIF YNPRASPTEF VVPFAKYQKA LYGNQISLGM RFRMMFETEE LGTRRYMGTI  360
TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP  420
RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM QQNSSFSNAA  480
MQSEYLRSLS NPNMQNMVMS AKSDSATE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1736040147388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462960634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966097.10.0auxin response factor 19 isoform X1
RefseqXP_006656453.20.0PREDICTED: auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A0E0LFB80.0A0A0E0LFB8_ORYPU; Auxin response factor
TrEMBLA0A368QXM80.0A0A368QXM8_SETIT; Auxin response factor
TrEMBLA0A453SP410.0A0A453SP41_AEGTS; Auxin response factor
TrEMBLJ3MHD50.0J3MHD5_ORYBR; Auxin response factor
STRINGOB06G34290.10.0(Oryza brachyantha)
STRINGOPUNC06G24250.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]