PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462960670

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

M-type_MADS

Protein Properties

Length: 90aa MW: 9976.62 Da PI: 10.464

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462960670	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.9	3.2e-29	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l +s 462960670 9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 58 79********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.9E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.73	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-28	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.40E-35	2	58	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.0E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGR 60 HGYGRDLWSP IHVRESLILG SAAGCCCAAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-18	1	59	1	59	MEF2 CHIMERA
6byy_B	2e-18	1	59	1	59	MEF2 CHIMERA
6byy_C	2e-18	1	59	1	59	MEF2 CHIMERA
6byy_D	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_A	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_B	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_C	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_D	2e-18	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462960670

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975181	2e-62	EU975181.1 Zea mays clone 483488 MADS-box protein AGL66 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790798.1	2e-35	agamous-like MADS-box protein AGL66 isoform X1
Refseq	XP_026660735.1	2e-35	agamous-like MADS-box protein AGL66 isoform X2
Swissprot	Q1PFC2	2e-31	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	A0A427ADQ5	1e-34	A0A427ADQ5_ENSVE; Uncharacterized protein
STRING	XP_008790798.1	6e-35	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4953	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	4e-33	AGAMOUS-like 66

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]