PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462960777
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 149aa    MW: 16683.4 Da    PI: 9.6162
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462960777genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.85e-221053245
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               + en+s rq+t+skRr gilKKA+ELS+LCd++  +++fs+tgk
  462960777 10 KLENSSGRQITYSKRRSGILKKAKELSILCDIDLILLMFSPTGK 53
               679***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-29160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.474153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-25290IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGRVKLKIKK LENSSGRQIT YSKRRSGILK KAKELSILCD IDLILLMFSP TGKPTICIGE  60
RSTIEEVIAK YAQLTPQERA KRKLESLEEN FAKQHLIGLQ CAAAQFHNDM QLPLGLTGDP  120
NASSWFHNGG ADVQQPMMLP DDPSLLHQR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462960777
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693376e-89KF469337.1 Brachypodium distachyon MADS-box transcription factor 43 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317426.14e-51agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_021317427.14e-51agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ1PFA44e-42AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLB9G8P52e-87B9G8P5_ORYSJ; Uncharacterized protein
STRINGGRMZM2G441115_P016e-78(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46263659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-33AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]