PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462960780

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 296aa MW: 31701.9 Da PI: 8.2347

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462960780	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.2e-39	45	106	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCds+ntkfCyynny++sqPryfCkaCrryWt+GG+lrnvPvGg+rrknk+sss 462960780 45 REEALKCPRCDSNNTKFCYYNNYNMSQPRYFCKACRRYWTQGGTLRNVPVGGARRKNKRSSS 106 67899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	43	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-34	47	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.152	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAERSDYAVL HPDGVDTMEE ARNVNQALQQ HTASGDGVQM PRPQREEALK CPRCDSNNTK 60 FCYYNNYNMS QPRYFCKACR RYWTQGGTLR NVPVGGARRK NKRSSSSSSA SPSSSNTIAR 120 AINNNNNNMP TLSALTSFPN VLPTFMSTGF EFSLPLAPPL SLSRSVAPAP ALVSGGSMVT 180 TPSFLDLLRG GVLDHEGSGG NGMERSLPSS FGLGVMQHGV MGDHRDVASI GGGSATATTQ 240 LGGQHQWVGA QHEHNKDDGS ATGSDRLQQV GVDQQWNGVL KDRDNKNGSS TSGDNH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462960780

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302218.1	3e-54	dof zinc finger protein PBF
Swissprot	O24463	4e-54	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	F6KPP6	3e-53	F6KPP6_SORBI; Dof-type zinc finger protein
STRING	Si026678m	5e-54	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-33	TARGET OF MONOPTEROS 6

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]