PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462961015
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 221aa    MW: 24566.7 Da    PI: 8.2076
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462961015genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.23.3e-2359118258
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                dDg++WrKYG K+++  +f r Y+rCt++   gC++kk+v+++++dp ++e+tY g+H+ 
  462961015  59 DDGFAWRKYGEKVINHHRFRRFYFRCTYRdehGCSAKKQVQQTQDDPALFETTYFGKHTA 118
                8***************************99999*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-2452120IPR003657WRKY domain
PROSITE profilePS5081120.24353121IPR003657WRKY domain
SuperFamilySSF1182901.83E-2256121IPR003657WRKY domain
SMARTSM007748.6E-3058122IPR003657WRKY domain
PfamPF031068.6E-2359117IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGADPGRQKL AEQIIRSIDR ALAAVRGAGD VDKQKRRSKR RATCGRGETG ARVVSATTDD  60
GFAWRKYGEK VINHHRFRRF YFRCTYRDEH GCSAKKQVQQ TQDDPALFET TYFGKHTAAC  120
PRDNAPLAVA ECAFVVSQAH FPTGFRPCAA GNSTSLKGEV PSLPAGEKAL MLPDVPECSE  180
IYWPVEDRLM KFVSADCSYP SPARVESFDD SLEELVSLLW S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-1653117367OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136DKQKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462961015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810145.13e-46probable WRKY transcription factor 38
TrEMBLA0A2S3HB447e-45A0A2S3HB44_9POAL; Uncharacterized protein
STRINGPavir.J05250.1.p5e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1869769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.18e-15WRKY DNA-binding protein 64