PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462961204

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 174aa MW: 19539.9 Da PI: 5.0016

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462961204	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	91.6	6.2e-29	39	83	3	47
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalr 47 ++al+cp Cds++tkfCyynnys++qPryfCkaCrryWt+GG+l 462961204 39 DEALRCPGCDSSKTKFCYYNNYSMKQPRYFCKACRRYWTQGGSLS 83 7899***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-18	36	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-25	40	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	21.772	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MKEFKGTAPL VVEAWNVKLA RKQAAASTGA ERKPRPQLDE ALRCPGCDSS KTKFCYYNNY 60 SMKQPRYFCK ACRRYWTQGG SLSAQHLVPA SSTADFPNVL PTFWEDFMEE NTSPLLDVTS 120 SDLLPITSDM QDLEGFNYES FLLDDISPTE AQAADTNISS KAPMRSIPNR FSQD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462961204

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP37779	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-27	Dof family protein