PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462961466

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 193aa MW: 21068.1 Da PI: 7.2078

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462961466	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	74.1	2.7e-23	84	146	9	71
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71 r+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeA+a+ r+ 462961466 84 XRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEADAKERQ 146 589********************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.594	75	175	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-23	84	148	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
DCSNAGSTGP TTAQQYCYRS ESPPSRVSSS CSPPPTPPAA QLQLVGNVAP XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXRRCADG CVLAPYFPPT EPAKFTTAHR VFGASNIIKL 120 LQDLPESSRA DAVSSMVYEA DAKERQANEL KVQLARAQAD LLNAQAQHAN LLALLCVDMA 180 NNNRRDGQNS QQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-22	85	181	20	121	LOB family transfactor Ramosa2.1
5ly0_B	2e-22	85	181	20	121	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462961466

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953937	4e-78	EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004987050.2	2e-61	LOB domain-containing protein 1
TrEMBL	A0A368SSE3	5e-60	A0A368SSE3_SETIT; Uncharacterized protein
STRING	Si037280m	1e-60	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	9e-32	LOB domain-containing protein 11