PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462961643

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 96aa MW: 10035.7 Da PI: 9.5348

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462961643	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.5	1.1e-19	23	68	1	46
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l 462961643 23 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKML 68 7*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.934	22	96	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-19	23	68	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MPAASGLGAA GAGPGSALNT ITPCAACKLL RRRCAQECPF SPYFSPLEPH KFAAVHKVFG 60 ASNVSKMLLV GRIQISLSKE VSSQDTKACS VTIRTE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-17	23	68	11	56	LOB family transfactor Ramosa2.1
5ly0_B	1e-17	23	68	11	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462961643

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134341	2e-60	AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence.
GenBank	AP014961	2e-60	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	2e-60	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167556.1	2e-33	LOB domain-containing protein 15-like
Swissprot	Q9AT61	8e-33	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3B5YTY6	1e-33	A0A3B5YTY6_WHEAT; Uncharacterized protein
TrEMBL	A0A446JPG5	1e-33	A0A446JPG5_TRITD; Uncharacterized protein
TrEMBL	M7ZFV1	6e-34	M7ZFV1_TRIUA; Uncharacterized protein
STRING	Pavir.Ca01098.1.p	5e-36	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-32	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]