PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462962111

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 454aa MW: 49294.6 Da PI: 6.184

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462962111	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.4	4.4e-07	406	429	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ 462962111 406 TKPCAYFNTARGCRNGANCTFLHD 429 789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.216	403	431	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-6	406	431	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.1E-5	406	429	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.53E-5	408	432	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MMGSRRSNRV SWATGPNLCK VRLFLSDDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL 60 PPGFESLQPA NDVKIDISKV PLIRWKCPPK MLFNPDWLVV AGEESKESAL QNERIFGALE 120 AIYPRPSNIP PNPFVSPDVV DSHYDDSQTL LVPLIPIEED DTSDQLEEPY VNLPNNYHQT 180 DKYETAVISA PRVTDAPIIT TTQHQANGFI GTASAGMPIE PDVLAAASAA YTAIMQSNQM 240 GSMIDQDLLI KILSDPAQLE RLMKEYGTIK HEQATTSAVV APMLPGPPPQ TPVSAPPSFP 300 DPMATYQTLN PTLPPPPPVL NRLPPAVPSV SMNPPANSSQ AVNFSSRGIG YYKTLIHQHG 360 GERQEPLEQH GVQFGAYQQS NPTQTNTVDV ASSGNVQGHY PKPRLTKPCA YFNTARGCRN 420 GANCTFLHDV SAARKEQPKG AKRLKLDSRI AGQS

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MMGSRRSNRV SWATGPNLCK VRLFLSDDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL  60
PPGFESLQPA NDVKIDISKV PLIRWKCPPK MLFNPDWLVV AGEESKESAL QNERIFGALE  120
AIYPRPSNIP PNPFVSPDVV DSHYDDSQTL LVPLIPIEED DTSDQLEEPY VNLPNNYHQT  180
DKYETAVISA PRVTDAPIIT TTQHQANGFI GTASAGMPIE PDVLAAASAA YTAIMQSNQM  240
GSMIDQDLLI KILSDPAQLE RLMKEYGTIK HEQATTSAVV APMLPGPPPQ TPVSAPPSFP  300
DPMATYQTLN PTLPPPPPVL NRLPPAVPSV SMNPPANSSQ AVNFSSRGIG YYKTLIHQHG  360
GERQEPLEQH GVQFGAYQQS NPTQTNTVDV ASSGNVQGHY PKPRLTKPCA YFNTARGCRN  420
GANCTFLHDV SAARKEQPKG AKRLKLDSRI AGQS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462962111

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823312.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	Q7XM16	1e-179	C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0A9CYC0	0.0	A0A0A9CYC0_ARUDO; Uncharacterized protein
STRING	Pavir.Ga00146.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8680	10	13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]