PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462962174
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 217aa    MW: 23575.2 Da    PI: 8.6318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462962174genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.2e-133986355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  462962174 39 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 86
               67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8093685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-103986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1839104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-174094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-134190No hitNo description
SMARTSM003536.1E-154291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MLDAGVPAPF QARPVKRSYD AMVAAVEAPA PSRPASQNQD HILAERKRRE KLSQRFIALS  60
KIVPGLKKMD KASVLGDAIK YVKQLQDQVK GLEDVARRRP VEAAVLVKKT QLSADDDDGS  120
SCDENFVGGE AGTLPEIEAR VSDRTVLVKI HCENRKGVLI AALSEVEKLG LTIMNTNVLP  180
FTSSSLDITI IAMAGDDFCL SVKDIVKKLN QAFKSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-144089857Transcription factor MYC2
5gnj_B2e-144089857Transcription factor MYC2
5gnj_E2e-144089857Transcription factor MYC2
5gnj_F2e-144089857Transcription factor MYC2
5gnj_G2e-144089857Transcription factor MYC2
5gnj_I2e-144089857Transcription factor MYC2
5gnj_M2e-144089857Transcription factor MYC2
5gnj_N2e-144089857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449ERKRRE
24550RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462962174
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205390.0AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795190.11e-133transcription factor bHLH18-like
SwissprotQ9T0722e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2T7C1M31e-132A0A2T7C1M3_9POAL; Uncharacterized protein
STRINGSi036393m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-58bHLH family protein