PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462962249

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 229aa MW: 25636.6 Da PI: 6.874

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462962249	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	210.5	9.1e-65	2	177	101	273
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 aIl+a+ g++rvHi+Df+++qG+QW+ L++aLa+R++gpps+RiTg+g++ +g ++el+e+g rLa++A++l+vpf+f+ + a++l++l++++L++ pgE 462962249 2 AILDAIGGCDRVHIVDFSLMQGAQWAELMHALAKRRGGPPSVRITGIGPAPTGPRDELREVGLRLAELAQTLDVPFSFRGVCADQLDQLRPWMLNLVPGE 101 9**********************************************9999******************************************* PP GRAS 201 alaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 alaVn+vlqlhrll ++ + + ++d++L+ v +++P+v++vveqeadhn++s+lerf++al +y+a+fds+ea 462962249 102 ALAVNSVLQLHRLLVDPDADPAvpaPIDTLLDWVTGIQPRVFTVVEQEADHNRPSLLERFTNALFHYAAMFDSMEA 177 *********9665554444449**********************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	35.371	1	229	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-62	2	177	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MAILDAIGGC DRVHIVDFSL MQGAQWAELM HALAKRRGGP PSVRITGIGP APTGPRDELR 60 EVGLRLAELA QTLDVPFSFR GVCADQLDQL RPWMLNLVPG EALAVNSVLQ LHRLLVDPDA 120 DPAVPAPIDT LLDWVTGIQP RVFTVVEQEA DHNRPSLLER FTNALFHYAA MFDSMEALGC 180 RNVNAFMFFI PTRNKPKLRF TCNHDQAKRR FSNHDVTPAK SLWQPWQLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-25	2	182	100	276	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462962249

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963578.1	7e-94	DELLA protein DWARF8
Swissprot	Q8S4W7	3e-51	GAI1_VITVI; DELLA protein GAI1
TrEMBL	K3ZCZ8	2e-92	K3ZCZ8_SETIT; Uncharacterized protein
STRING	Si024429m	3e-93	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	4e-49	GRAS family protein