PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462962369
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 239aa    MW: 27157.9 Da    PI: 8.2541
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462962369genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM682.6e-21261637128
        NAM   7 FhPtdeelvveyLkkkvegkk.........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgyW 83 
                F P deel+ e+L+  v +k+         l   +     i+   di++++P++Lp  v+ + +  +fF+++ k ++tg+rk+r+           + + 
  462962369  26 FVPPDEELI-EHLESMVLEKQgggsrvhplL---NhfipSIEGDnDICYTHPENLP--VTRDGQIKHFFHRTFKIHSTGTRKRRKimsesghhsS-EDVG 118
                99*******.99****999998998886552...232223665569**********..54566777******************64433333321.1222 PP

        NAM  84 k.atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                k  +g  ++v++ +g+++g +k++++ ++++ k+e t+Wvmh+y+l
  462962369 119 KaISGIRRPVIV-RGRQKGWRKIMMLLNQKRGKTETTNWVMHQYQL 163
                213455666666.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.13720181IPR003441NAC domain
PfamPF023654.4E-826163IPR003441NAC domain
SuperFamilySSF1019414.18E-2026181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLDLYVHSCN NPCVETSKQK KDNKMFVPPD EELIEHLESM VLEKQGGGSR VHPLLNHFIP  60
SIEGDNDICY THPENLPVTR DGQIKHFFHR TFKIHSTGTR KRRKIMSESG HHSSEDVGKA  120
ISGIRRPVIV RGRQKGWRKI MMLLNQKRGK TETTNWVMHQ YQLCMSKDKD GELLVSKVFY  180
RCPDVTMIEQ NMRSVGDLVS SDQGQVQGNN QHIPSQDHVQ SLDSEPDTTL SLGLSTGGL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462962369
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447408.21e-73NAC domain-containing protein 73
SwissprotQ9M0F84e-45NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1Z5RBA82e-71A0A1Z5RBA8_SORBI; Uncharacterized protein (Fragment)
STRINGSb06g000536.14e-65(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3774923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-47NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]