PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462962559

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 855aa MW: 92096.1 Da PI: 8.9066

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462962559	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.9	2.4e-14	240	302	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ 462962559 240 EDEAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSARISCVTAENAALKQQL 302 5789********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.1E-14	240	304	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.5E-13	240	302	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.151	242	302	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-16	244	302	No hit	No description
SuperFamily	SSF57959	8.13E-13	244	302	No hit	No description
CDD	cd14704	1.57E-20	245	296	No hit	No description
Gene3D	G3DSA:3.10.20.90	3.6E-14	760	837	No hit	No description
SuperFamily	SSF54236	1.43E-14	760	839	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50053	14.251	762	838	IPR000626	Ubiquitin domain
SMART	SM00213	1.2E-9	762	834	IPR000626	Ubiquitin domain
Pfam	PF00240	2.1E-9	764	835	IPR000626	Ubiquitin domain
CDD	cd01769	2.39E-7	767	834	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MNDTGIATDV SSRVDTAVLP SRRSLRRRGE LPAPPAGDPS RQEAAGCDRR HCQVKAAQGR 60 CVRLRPSHAA AHAGSSPPRR LINPTDSVRR PNPPVLFPFY VGNPARFRNR VRNPNCLRRR 120 SVAEPSLLAP VAQDPFADLP FPDFQAPPVD DTFAFEDFDL DDLDLDVDFD LDLFAPDGQL 180 SPPPPPLVTS SSSAASPERG SSSSGAGADG GLRNEESSES SSRSATGQDS RCKEKGDGPE 240 DEAKRRARLV RNRESAHLSR QRKKQYVEEL EGKVKAMQAT IADLSARISC VTAENAALKQ 300 QLGGAAGGAP PPMPMYPAVY PLPMPWVHPA YAMRGSQVPL VPIPRLKPQQ PAPAAAEPPA 360 KKARKTKKVA SVSLLGLLCL LMVSGCLIPA VNRMYGAVDT GEGAAFGPSH HGRVLAVEGP 420 RSSVGEGIDP KPPQNASESL PALLYLPRNG KHVKINGNLV IKSIVASEKA SSRVPSYDGK 480 ILGSQGNEET SLAIPGYVAP LKAGEVMEST TETKNKLMAL VPGDGKIYRD DDGLLPQWFS 540 EAMSGPMLSS GMCTEVFQFD VSSTHSNGIV PVYSNAMSNS SQNFTENLPA GRRQKVNRRI 600 LYNEAIPLQG STPNDTEHLK AHPKNESYAR SKPVSSVVVS VLADPREAGD GNNEGRISSK 660 SLSRIFVVVL IDSPMGPSFR MWPSGSLPKV QAYRQGPSAK VDDGGVPHPS SPTDLRRSVF 720 VCLPSRLGVP LVRTSAGSPV DFAERREAAG TAHTGFWQVS SMYIRVKRNK NTYFIQCEPT 780 ETALNIKQKL HSLIDQPPSN QKLVLLATND VLEDSKTLAD QKVENDAVVA LALRKDDNGF 840 EDVFIARPED FMSSS

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MNDTGIATDV SSRVDTAVLP SRRSLRRRGE LPAPPAGDPS RQEAAGCDRR HCQVKAAQGR  60
CVRLRPSHAA AHAGSSPPRR LINPTDSVRR PNPPVLFPFY VGNPARFRNR VRNPNCLRRR  120
SVAEPSLLAP VAQDPFADLP FPDFQAPPVD DTFAFEDFDL DDLDLDVDFD LDLFAPDGQL  180
SPPPPPLVTS SSSAASPERG SSSSGAGADG GLRNEESSES SSRSATGQDS RCKEKGDGPE  240
DEAKRRARLV RNRESAHLSR QRKKQYVEEL EGKVKAMQAT IADLSARISC VTAENAALKQ  300
QLGGAAGGAP PPMPMYPAVY PLPMPWVHPA YAMRGSQVPL VPIPRLKPQQ PAPAAAEPPA  360
KKARKTKKVA SVSLLGLLCL LMVSGCLIPA VNRMYGAVDT GEGAAFGPSH HGRVLAVEGP  420
RSSVGEGIDP KPPQNASESL PALLYLPRNG KHVKINGNLV IKSIVASEKA SSRVPSYDGK  480
ILGSQGNEET SLAIPGYVAP LKAGEVMEST TETKNKLMAL VPGDGKIYRD DDGLLPQWFS  540
EAMSGPMLSS GMCTEVFQFD VSSTHSNGIV PVYSNAMSNS SQNFTENLPA GRRQKVNRRI  600
LYNEAIPLQG STPNDTEHLK AHPKNESYAR SKPVSSVVVS VLADPREAGD GNNEGRISSK  660
SLSRIFVVVL IDSPMGPSFR MWPSGSLPKV QAYRQGPSAK VDDGGVPHPS SPTDLRRSVF  720
VCLPSRLGVP LVRTSAGSPV DFAERREAAG TAHTGFWQVS SMYIRVKRNK NTYFIQCEPT  780
ETALNIKQKL HSLIDQPPSN QKLVLLATND VLEDSKTLAD QKVENDAVVA LALRKDDNGF  840
EDVFIARPED FMSSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462962559

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF245640	0.0	KF245640.1 Eleusine coracana cultivar MR1 bZIP transcription factor a mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461117.2	0.0	bZIP transcription factor 60 isoform X2
Refseq	XP_025800125.1	0.0	bZIP transcription factor 60-like
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A0K0K9Y8	0.0	A0A0K0K9Y8_ELECO; BZIP transcription factor a
STRING	Sb02g041070.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	2e-61	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]