PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462962580
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 243aa    MW: 26509.8 Da    PI: 8.683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462962580genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-1073120455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++++P +    sk   Ka +L + ++Y++sLq
  462962580  73 SHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 120
                8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-1767136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-1167124No hitNo description
Gene3DG3DSA:4.10.280.104.1E-1769137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.52369119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-773120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1075125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MPVRLKKKIP NRVQSPEAER RSKKSKLSAD AGAEDDDELS PAGGNGKGKE LVVAEAPKDY  60
IHVRARRGQA TDSHSLAERV RREKISERMK LLQDIVPGCS KVTGKAVMLD EIINYVQSLQ  120
RQVEFLSMKL STVNPRLEVD VVSLVQKDAN QPCVPAASTL APPPPPVYSL EGSSSAFRYA  180
SSPATAVQSA VTNDKSFDTR SSFVNHGIQD HSLEGFQNAN PQIGSLWEDD LQSLVQTGFR  240
GNT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462962580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370226e-93BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankBT0636606e-93BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBankKJ7268666e-93KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703449.11e-107transcription factor bHLH62
TrEMBLA0A109NDS51e-106A0A109NDS5_SORBI; Uncharacterized protein
STRINGPavir.Ha00788.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-54bHLH family protein