PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462962625
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 258aa    MW: 28427.5 Da    PI: 10.1935
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462962625genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.5e-17201011299
                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +s+ l+++ +fa++ gg   +++ +++    +++W+v++   + +g+ +l++GW eFv a+++ +g f+vF+++   ++ l+vkvf++
  462962625  20 SSHKLRISDEFARQLGGA--GGTAMVVSPVGSKVWRVEV--GRDGGGAFLGRGWPEFVAAHDIGVGWFLVFRHE--GGGMLTVKVFDT 101
                46789********99877..664555555666*******..9******************************65..58889*****97 PP
2B3437.9e-141372191497
                T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                + +v+p  f++++  ++ +++s++ +l ++ g+ W+v+   +k +++ +++++GW++F  +ng+ eg+ ++++++g++ f  +vkvf
  462962625 137 KKMVIPPAFVRNYitELAETNSQMPVLLSLCGKYWRVEA--EKDPSGnVFFSGGWSGFLASNGITEGEALLLRYEGNRVF--TVKVF 219
                459*******999**999999******************..777777699*************************99999..88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.429102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-1813104IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-1213102IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-1814104IPR015300DNA-binding pseudobarrel domain
CDDcd100177.69E-1515100No hitNo description
PfamPF023623.8E-1420101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-17120224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19121224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.323124222IPR003340B3 DNA binding domain
CDDcd100175.22E-13125219No hitNo description
SMARTSM010197.8E-9127222IPR003340B3 DNA binding domain
PfamPF023621.1E-11137219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDQSDDHGAI SRHLKVLLPS SHKLRISDEF ARQLGGAGGT AMVVSPVGSK VWRVEVGRDG  60
GGAFLGRGWP EFVAAHDIGV GWFLVFRHEG GGMLTVKVFD TSFCLRHFSR PLNVAANGRS  120
RSRRPQFIKP RLPGFMKKMV IPPAFVRNYI TELAETNSQM PVLLSLCGKY WRVEAEKDPS  180
GNVFFSGGWS GFLASNGITE GEALLLRYEG NRVFTVKVFG LDGCQKSFGK STKKMPSGMQ  240
QETEQSERTS SVSYLDAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125GRSRSRRPQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462962625
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.18e-86putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS742e-67Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RU495e-77A0A368RU49_SETIT; Uncharacterized protein
STRINGPavir.Ga02236.1.p5e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-12B3 family protein