PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462962809
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 243aa    MW: 26647.5 Da    PI: 8.9791
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462962809genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.34.2e-1696151256
                T--SS--HHHHHHHHHHHHHSSS--H.HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsa.eereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tkeq   Le+ F+++++++  +++  LAk+l+L  rqV vWFqNrRa+ k
  462962809  96 RKKLRLTKEQSALLENRFKEHSTLNPkKQKVALAKQLNLRPRQVEVWFQNRRARTK 151
                78889*****************9996257889**********************98 PP
2HD-ZIP_I/II118.53.6e-3896185190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLepe.rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq++lLE+ F+e+++L+p+ +Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
    462962809  96 RKKLRLTKEQSALLENRFKEHSTLNPKkQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-S 185
                  69***********************96379**********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1684154IPR009057Homeodomain-like
PROSITE profilePS5007116.16392153IPR001356Homeobox domain
SMARTSM003892.3E-1194157IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-1694156IPR009057Homeodomain-like
CDDcd000861.63E-1596154No hitNo description
PfamPF000461.8E-1396151IPR001356Homeobox domain
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
SMARTSM003402.5E-20153196IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-9153186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEHKHEDVGL ALGLSLGSGH QAPKEHPSPS SQPCALVPSL SLSLPADDGG LTTPVLPLFT  60
AVKRELPVEE DDDVMDRALY SVVSSAAGGE EGCNSRKKLR LTKEQSALLE NRFKEHSTLN  120
PKKQKVALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE LLKRCCETLT EENRRLHREL  180
QQLRSLNQAH PAAFFMPATA LSLCPSCERL ASAPGATAAD RPKAAGPGRA AHLFRTFTKS  240
AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100SRKKLRL
2145153RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462962809
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.11e-118homeobox-leucine zipper protein HOX15
SwissprotQ7G7374e-81HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLK4AE821e-117K4AE82_SETIT; Uncharacterized protein
STRINGSi037189m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-62HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]